AI-ACCELERATED DRUG DISCOVERY
Available from Reaxense
This protein is integrated into the Receptor.AI ecosystem as a prospective target with high therapeutic potential. We performed a comprehensive characterization of DnaJ homolog subfamily C member 3 including:
1. LLM-powered literature research
Our custom-tailored LLM extracted and formalized all relevant information about the protein from a large set of structured and unstructured data sources and stored it in the form of a Knowledge Graph. This comprehensive analysis allowed us to gain insight into DnaJ homolog subfamily C member 3 therapeutic significance, existing small molecule ligands, relevant off-targets, and protein-protein interactions.
Fig. 1. Preliminary target research workflow
2. AI-Driven Conformational Ensemble Generation
Starting from the initial protein structure, we employed advanced AI algorithms to predict alternative functional states of DnaJ homolog subfamily C member 3, including large-scale conformational changes along "soft" collective coordinates. Through molecular simulations with AI-enhanced sampling and trajectory clustering, we explored the broad conformational space of the protein and identified its representative structures. Utilizing diffusion-based AI models and active learning AutoML, we generated a statistically robust ensemble of equilibrium protein conformations that capture the receptor's full dynamic behavior, providing a robust foundation for accurate structure-based drug design.
Fig. 2. AI-powered molecular dynamics simulations workflow
3. Binding pockets identification and characterization
We employed the AI-based pocket prediction module to discover orthosteric, allosteric, hidden, and cryptic binding pockets on the protein’s surface. Our technique integrates the LLM-driven literature search and structure-aware ensemble-based pocket detection algorithm that utilizes previously established protein dynamics. Tentative pockets are then subject to AI scoring and ranking with simultaneous detection of false positives. In the final step, the AI model assesses the druggability of each pocket enabling a comprehensive selection of the most promising pockets for further targeting.
Fig. 3. AI-based binding pocket detection workflow
4. AI-Powered Virtual Screening
Our ecosystem is equipped to perform AI-driven virtual screening on DnaJ homolog subfamily C member 3. With access to a vast chemical space and cutting-edge AI docking algorithms, we can rapidly and reliably predict the most promising, novel, diverse, potent, and safe small molecule ligands of DnaJ homolog subfamily C member 3. This approach allows us to achieve an excellent hit rate and to identify compounds ready for advanced lead discovery and optimization.
Fig. 4. The screening workflow of Receptor.AI
Receptor.AI, in partnership with Reaxense, developed a next-generation technology for on-demand focused library design to enable extensive target exploration.
The focused library for DnaJ homolog subfamily C member 3 includes a list of the most effective modulators, each annotated with 38 ADME-Tox and 32 physicochemical and drug-likeness parameters. Furthermore, each compound is shown with its optimal docking poses, affinity scores, and activity scores, offering a detailed summary.
DnaJ homolog subfamily C member 3
partner:
Reaxense
upacc:
Q13217
UPID:
DNJC3_HUMAN
Alternative names:
Endoplasmic reticulum DNA J domain-containing protein 6; Interferon-induced, double-stranded RNA-activated protein kinase inhibitor; Protein kinase inhibitor of 58 kDa
Alternative UPACC:
Q13217; Q86WT9; Q8N4N2
Background:
DnaJ homolog subfamily C member 3, also known as Endoplasmic reticulum DNA J domain-containing protein 6, plays a crucial role in the unfolded protein response (UPR) during endoplasmic reticulum (ER) stress. It acts as a negative regulator of EIF2AK4/GCN2 kinase activity, preventing phosphorylation of eIF-2-alpha, thus attenuating general protein synthesis under stress conditions. Additionally, it serves as a co-chaperone of HSPA8/HSC70, enhancing its ATPase activity.
Therapeutic significance:
This protein is implicated in a disease characterized by juvenile-onset diabetes, neurodegeneration, ataxia, upper-motor-neuron damage, peripheral neuropathy, hearing loss, and cerebral atrophy. Understanding the role of DnaJ homolog subfamily C member 3 could open doors to potential therapeutic strategies for this complex condition.
