AI-ACCELERATED DRUG DISCOVERY
Available from Reaxense
This protein is integrated into the Receptor.AI ecosystem as a prospective target with high therapeutic potential. We performed a comprehensive characterization of Lysophospholipid acyltransferase 2 including:
1. LLM-powered literature research
Our custom-tailored LLM extracted and formalized all relevant information about the protein from a large set of structured and unstructured data sources and stored it in the form of a Knowledge Graph. This comprehensive analysis allowed us to gain insight into Lysophospholipid acyltransferase 2 therapeutic significance, existing small molecule ligands, relevant off-targets, and protein-protein interactions.
Fig. 1. Preliminary target research workflow
2. AI-Driven Conformational Ensemble Generation
Starting from the initial protein structure, we employed advanced AI algorithms to predict alternative functional states of Lysophospholipid acyltransferase 2, including large-scale conformational changes along "soft" collective coordinates. Through molecular simulations with AI-enhanced sampling and trajectory clustering, we explored the broad conformational space of the protein and identified its representative structures. Utilizing diffusion-based AI models and active learning AutoML, we generated a statistically robust ensemble of equilibrium protein conformations that capture the receptor's full dynamic behavior, providing a robust foundation for accurate structure-based drug design.
Fig. 2. AI-powered molecular dynamics simulations workflow
3. Binding pockets identification and characterization
We employed the AI-based pocket prediction module to discover orthosteric, allosteric, hidden, and cryptic binding pockets on the protein’s surface. Our technique integrates the LLM-driven literature search and structure-aware ensemble-based pocket detection algorithm that utilizes previously established protein dynamics. Tentative pockets are then subject to AI scoring and ranking with simultaneous detection of false positives. In the final step, the AI model assesses the druggability of each pocket enabling a comprehensive selection of the most promising pockets for further targeting.
Fig. 3. AI-based binding pocket detection workflow
4. AI-Powered Virtual Screening
Our ecosystem is equipped to perform AI-driven virtual screening on Lysophospholipid acyltransferase 2. With access to a vast chemical space and cutting-edge AI docking algorithms, we can rapidly and reliably predict the most promising, novel, diverse, potent, and safe small molecule ligands of Lysophospholipid acyltransferase 2. This approach allows us to achieve an excellent hit rate and to identify compounds ready for advanced lead discovery and optimization.
Fig. 4. The screening workflow of Receptor.AI
Receptor.AI, in partnership with Reaxense, developed a next-generation technology for on-demand focused library design to enable extensive target exploration.
The focused library for Lysophospholipid acyltransferase 2 includes a list of the most effective modulators, each annotated with 38 ADME-Tox and 32 physicochemical and drug-likeness parameters. Furthermore, each compound is shown with its optimal docking poses, affinity scores, and activity scores, offering a detailed summary.
Lysophospholipid acyltransferase 2
partner:
Reaxense
upacc:
Q6ZWT7
UPID:
MBOA2_HUMAN
Alternative names:
1-acylglycerophosphate O-acyltransferase MBOAT2; 1-acylglycerophosphocholine O-acyltransferase MBOAT2; 1-acylglycerophosphoethanolamine MBOAT2 O-acyltransferase; Lysophosphatidic acid acyltransferase; Lysophosphatidylcholine acyltransferase; Lysophosphatidylcholine acyltransferase 4; Lysophosphatidylethanolamine acyltransferase; Membrane-bound O-acyltransferase domain-containing protein 2
Alternative UPACC:
Q6ZWT7; A9EDR2; Q8NCE7; Q96KY4
Background:
Lysophospholipid acyltransferase 2 (LPLAT 2), encoded by the gene with accession number Q6ZWT7, plays a crucial role in the phospholipid remodeling pathway, known as the Lands cycle. It catalyzes the transfer of acyl groups to lysophospholipids, predominantly affecting lysophosphatidylethanolamine and lysophosphatidic acid. This enzyme's preference for oleoyl-CoA as the acyl donor underscores its specificity in lipid metabolism.
Therapeutic significance:
Understanding the role of Lysophospholipid acyltransferase 2 could open doors to potential therapeutic strategies. Its involvement in the critical reacylation step of the Lands cycle highlights its potential as a target for modulating lipid composition in cell membranes, which could have implications in diseases where lipid metabolism is disrupted.
