AI-ACCELERATED DRUG DISCOVERY
Available from Reaxense
This protein is integrated into the Receptor.AI ecosystem as a prospective target with high therapeutic potential. We performed a comprehensive characterization of Probable E3 ubiquitin-protein ligase MARCHF10 including:
1. LLM-powered literature research
Our custom-tailored LLM extracted and formalized all relevant information about the protein from a large set of structured and unstructured data sources and stored it in the form of a Knowledge Graph. This comprehensive analysis allowed us to gain insight into Probable E3 ubiquitin-protein ligase MARCHF10 therapeutic significance, existing small molecule ligands, relevant off-targets, and protein-protein interactions.
Fig. 1. Preliminary target research workflow
2. AI-Driven Conformational Ensemble Generation
Starting from the initial protein structure, we employed advanced AI algorithms to predict alternative functional states of Probable E3 ubiquitin-protein ligase MARCHF10, including large-scale conformational changes along "soft" collective coordinates. Through molecular simulations with AI-enhanced sampling and trajectory clustering, we explored the broad conformational space of the protein and identified its representative structures. Utilizing diffusion-based AI models and active learning AutoML, we generated a statistically robust ensemble of equilibrium protein conformations that capture the receptor's full dynamic behavior, providing a robust foundation for accurate structure-based drug design.
Fig. 2. AI-powered molecular dynamics simulations workflow
3. Binding pockets identification and characterization
We employed the AI-based pocket prediction module to discover orthosteric, allosteric, hidden, and cryptic binding pockets on the protein’s surface. Our technique integrates the LLM-driven literature search and structure-aware ensemble-based pocket detection algorithm that utilizes previously established protein dynamics. Tentative pockets are then subject to AI scoring and ranking with simultaneous detection of false positives. In the final step, the AI model assesses the druggability of each pocket enabling a comprehensive selection of the most promising pockets for further targeting.
Fig. 3. AI-based binding pocket detection workflow
4. AI-Powered Virtual Screening
Our ecosystem is equipped to perform AI-driven virtual screening on Probable E3 ubiquitin-protein ligase MARCHF10. With access to a vast chemical space and cutting-edge AI docking algorithms, we can rapidly and reliably predict the most promising, novel, diverse, potent, and safe small molecule ligands of Probable E3 ubiquitin-protein ligase MARCHF10. This approach allows us to achieve an excellent hit rate and to identify compounds ready for advanced lead discovery and optimization.
Fig. 4. The screening workflow of Receptor.AI
Receptor.AI, in partnership with Reaxense, developed a next-generation technology for on-demand focused library design to enable extensive target exploration.
The focused library for Probable E3 ubiquitin-protein ligase MARCHF10 includes a list of the most effective modulators, each annotated with 38 ADME-Tox and 32 physicochemical and drug-likeness parameters. Furthermore, each compound is shown with its optimal docking poses, affinity scores, and activity scores, offering a detailed summary.
Probable E3 ubiquitin-protein ligase MARCHF10
partner:
Reaxense
upacc:
Q8NA82
UPID:
MARHA_HUMAN
Alternative names:
Membrane-associated RING finger protein 10; Membrane-associated RING-CH protein X; RING finger protein 190; RING-type E3 ubiquitin transferase MARCHF10
Alternative UPACC:
Q8NA82; D3DU09; Q8IYS7; Q8N7Z7
Background:
The Probable E3 ubiquitin-protein ligase MARCHF10, identified by the accession number Q8NA82, plays a pivotal role in the ubiquitin-proteasome system. This enzyme, also known as Membrane-associated RING finger protein 10, Membrane-associated RING-CH protein X, RING finger protein 190, and RING-type E3 ubiquitin transferase MARCHF10, is instrumental in transferring ubiquitin from an E2 ubiquitin-conjugating enzyme to targeted substrates. Its activity is crucial for the regulation of protein turnover, impacting various cellular processes.
Therapeutic significance:
Understanding the role of Probable E3 ubiquitin-protein ligase MARCHF10 could open doors to potential therapeutic strategies.
